Sample ID: Escherichia_coli_p1

Cgmlst Stats

Cgmlst Alleles

Mlst

Reference: (Silva et al. 2018)

Ariba

Local database motif report (coding and non-coding)

Join phenotypes to found ge

Resfinder motif report

Reference: (Zankari et al. 2012)

Summary

Quast report

SNP report

References

Silva, Mickael, Miguel P. Machado, Diogo N. Silva, Mirko Rossi, Jacob Moran-Gilad, Sergio Santos, Mario Ramirez, and João André Carriço. 2018. “chewBBACA: A Complete Suite for Gene-by-Gene Schema Creation and Strain Identification.” Journal Article. Microbial Genomics 4 (3). https://doi.org/https://doi.org/10.1099/mgen.0.000166.
Zankari, Ea, Henrik Hasman, Salvatore Cosentino, Martin Vestergaard, Simon Rasmussen, Ole Lund, Frank M. Aarestrup, and Mette Voldby Larsen. 2012. “Identification of acquired antimicrobial resistance genes.” Journal of Antimicrobial Chemotherapy 67 (11): 2640–44. https://doi.org/10.1093/jac/dks261.